HL_9I5V_009

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGCCCAUC

Length

8 nucleotides

Bulged bases

9I5V|1|A|G|434, 9I5V|1|A|C|435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_009 not in the Motif Atlas

Geometric match to HL_8KEB_002

Geometric discrepancy: 0.3015

The information below is about HL_8KEB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97725.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9I5V|1|A|G|433
9I5V|1|A|G|434
9I5V|1|A|C|435
9I5V|1|A|C|436
9I5V|1|A|C|437
9I5V|1|A|A|438
9I5V|1|A|U|439
9I5V|1|A|C|440

Current chains

Chain A

23S rRNA

Nearby chains