HL_9I5V_012
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUUGCAUAA
- Length
- 10 nucleotides
- Bulged bases
- 9I5V|1|A|A|596
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9I5V_012 not in the Motif Atlas
- Geometric match to HL_8B0X_048
- Geometric discrepancy: 0.0729
- The information below is about HL_8B0X_048
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9I5V|1|A|U|588
9I5V|1|A|U|589
9I5V|1|A|U|590
9I5V|1|A|U|591
9I5V|1|A|G|592
9I5V|1|A|C|593
9I5V|1|A|A|594
9I5V|1|A|U|595
9I5V|1|A|A|596
9I5V|1|A|A|597
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL32
- Chain E
- Large ribosomal subunit protein uL3
- Chain O
- Large ribosomal subunit protein uL15
- Chain T
- Large ribosomal subunit protein bL20
- Chain U
- Large ribosomal subunit protein bL21
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