HL_9I5V_044
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9I5V|1|A|G|2752, 9I5V|1|A|C|2756
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9I5V_044 not in the Motif Atlas
- Geometric match to HL_9E6Q_064
- Geometric discrepancy: 0.1012
- The information below is about HL_9E6Q_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.4
- Basepair signature
- cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 12
Unit IDs
9I5V|1|A|C|2746
9I5V|1|A|U|2747
9I5V|1|A|G|2748
9I5V|1|A|A|2749
9I5V|1|A|A|2750
9I5V|1|A|A|2751
9I5V|1|A|G|2752
9I5V|1|A|C|2753
9I5V|1|A|A|2754
9I5V|1|A|U|2755
9I5V|1|A|C|2756
9I5V|1|A|U|2757
9I5V|1|A|A|2758
9I5V|1|A|A|2759
9I5V|1|A|G|2760
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 13
- Large ribosomal subunit protein uL6
- Chain 15
- DUF4295 domain-containing protein
- Chain 8
- Large ribosomal subunit protein bL36
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