HL_9I5V_049

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9I5V|1|a|G|271

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_049 not in the Motif Atlas

Geometric match to HL_4LFB_006

Geometric discrepancy: 0.123

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9I5V|1|a|G|264
9I5V|1|a|G|265
9I5V|1|a|U|266
9I5V|1|a|A|267
9I5V|1|a|A|268
9I5V|1|a|C|269
9I5V|1|a|G|270
9I5V|1|a|G|271
9I5V|1|a|C|272

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

Small ribosomal subunit protein bS20

Chain e

Small ribosomal subunit protein uS17