HL_9I5V_054

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

9I5V|1|a|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_054 not in the Motif Atlas

Geometric match to HL_8B0X_013

Geometric discrepancy: 0.1959

The information below is about HL_8B0X_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27656.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

9I5V|1|a|G|617
9I5V|1|a|C|618
9I5V|1|a|U|619
9I5V|1|a|C|620
9I5V|1|a|A|621
9I5V|1|a|A|622
9I5V|1|a|C|623

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

Small ribosomal subunit protein bS16

Chain l

Small ribosomal subunit protein uS4