HL_9I5V_060

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAU(2MG)AUACGC

Length

10 nucleotides

Bulged bases

9I5V|1|a|G|970

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_060 not in the Motif Atlas

Geometric match to HL_4LFB_021

Geometric discrepancy: 0.1631

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9I5V|1|a|G|962
9I5V|1|a|A|963
9I5V|1|a|U|964
9I5V|1|a|2MG|965
9I5V|1|a|A|966
9I5V|1|a|U|967
9I5V|1|a|A|968
9I5V|1|a|C|969
9I5V|1|a|G|970
9I5V|1|a|C|971

Current chains

Chain a

16S rRNA

Nearby chains

Chain 14

Ribosome-associated translation inhibitor RaiA

Chain J

Small ribosomal subunit protein uS9

Chain K

Small ribosomal subunit protein uS10