HL_9I88_008

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I88_008 not in the Motif Atlas

Homologous match to HL_7A0S_008

Geometric discrepancy: 0.1005

The information below is about HL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.3

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

9I88|1|A|C|249
9I88|1|A|G|250
9I88|1|A|G|251
9I88|1|A|C|252
9I88|1|A|G|253
9I88|1|A|A|254
9I88|1|A|G|255

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL35

Chain O

Large ribosomal subunit protein uL15