HL_9I88_012

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

9I88|1|A|A|372, 9I88|1|A|A|373, 9I88|1|A|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I88_012 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3571

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9I88|1|A|G|370
9I88|1|A|U|371
9I88|1|A|A|372
9I88|1|A|A|373
9I88|1|A|U|374
9I88|1|A|A|375
9I88|1|A|A|376
9I88|1|A|U|377
9I88|1|A|C|378

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

Large ribosomal subunit protein uL4

Chain X

Large ribosomal subunit protein uL24