HL_9I88_028

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

9I88|1|A|A|1114

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I88_028 not in the Motif Atlas

Homologous match to HL_1MMS_003

Geometric discrepancy: 0.3435

The information below is about HL_1MMS_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9I88|1|A|C|1108
9I88|1|A|U|1109
9I88|1|A|U|1110
9I88|1|A|A|1111
9I88|1|A|G|1112
9I88|1|A|A|1113
9I88|1|A|A|1114
9I88|1|A|G|1115
9I88|1|A|C|1116
9I88|1|A|A|1117
9I88|1|A|G|1118

Current chains

Chain A

23S ribosomal RNA

Nearby chains