HL_9I88_032

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I88_032 not in the Motif Atlas

Homologous match to HL_7A0S_032

Geometric discrepancy: 0.1011

The information below is about HL_7A0S_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.5

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

138

Unit IDs

9I88|1|A|G|1318
9I88|1|A|U|1319
9I88|1|A|G|1320
9I88|1|A|A|1321
9I88|1|A|G|1322
9I88|1|A|A|1323
9I88|1|A|A|1324
9I88|1|A|U|1325
9I88|1|A|C|1326

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL32

Chain Q

Large ribosomal subunit protein bL17

Chain V

Large ribosomal subunit protein uL22