HL_9I88_058

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

9I88|1|A|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I88_058 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.143

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9I88|1|A|C|2431
9I88|1|A|G|2432
9I88|1|A|C|2433
9I88|1|A|A|2434
9I88|1|A|U|2435
9I88|1|A|G|2436
9I88|1|A|G|2437
9I88|1|A|A|2438
9I88|1|A|A|2439
9I88|1|A|G|2440

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL15