HL_9I88_065
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9I88|1|A|G|2778, 9I88|1|A|C|2782
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9I88_065 not in the Motif Atlas
- Homologous match to HL_7A0S_065
- Geometric discrepancy: 0.2496
- The information below is about HL_7A0S_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.3
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 11
Unit IDs
9I88|1|A|C|2772
9I88|1|A|U|2773
9I88|1|A|G|2774
9I88|1|A|A|2775
9I88|1|A|A|2776
9I88|1|A|A|2777
9I88|1|A|G|2778
9I88|1|A|C|2779
9I88|1|A|A|2780
9I88|1|A|U|2781
9I88|1|A|C|2782
9I88|1|A|U|2783
9I88|1|A|A|2784
9I88|1|A|A|2785
9I88|1|A|G|2786
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 9
- Large ribosomal subunit protein bL36
- Chain K
- Large ribosomal subunit protein uL6
- Chain M
- Large ribosomal subunit protein uL13
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