HL_9I88_096

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9I88|1|a|G|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I88_096 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.1963

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9I88|1|a|G|1101
9I88|1|a|U|1102
9I88|1|a|U|1103
9I88|1|a|A|1104
9I88|1|a|A|1105
9I88|1|a|G|1106
9I88|1|a|U|1107
9I88|1|a|C|1108

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

Small ribosomal subunit protein uS2

Chain h

Small ribosomal subunit protein uS7