HL_9IOB_004

3D structure

PDB id

9IOB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the hexameric DRT9-ncRNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UGUCAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOB_004 not in the Motif Atlas

Geometric match to HL_3HHN_010

Geometric discrepancy: 0.3051

The information below is about HL_3HHN_010

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_68642.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9IOB|1|B|U|90
9IOB|1|B|G|91
9IOB|1|B|U|92
9IOB|1|B|C|93
9IOB|1|B|A|94
9IOB|1|B|A|95
9IOB|1|B|A|96
9IOB|1|B|G|97

Current chains

Chain B

RNA (177-MER)

Nearby chains

Chain F

RNA (177-MER)