HL_9IOT_045

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

9IOT|1|A|A|1913

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_045 not in the Motif Atlas

Geometric match to HL_8CRE_047

Geometric discrepancy: 0.0978

The information below is about HL_8CRE_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

9IOT|1|A|G|1910
9IOT|1|A|PSU|1911
9IOT|1|A|A|1912
9IOT|1|A|A|1913
9IOT|1|A|C|1914
9IOT|1|A|3TD|1915
9IOT|1|A|A|1916
9IOT|1|A|PSU|1917
9IOT|1|A|A|1918
9IOT|1|A|A|1919
9IOT|1|A|C|1920

Current chains

Chain A

23S rRNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain v

Ribosome hibernation promoting factor