HL_9J1M_005

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UGAAUAUAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_005 not in the Motif Atlas

Geometric match to HL_5J7L_138

Geometric discrepancy: 0.3152

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9J1M|1|A|U|160
9J1M|1|A|G|161
9J1M|1|A|A|162
9J1M|1|A|A|163
9J1M|1|A|U|164
9J1M|1|A|A|165
9J1M|1|A|U|166
9J1M|1|A|A|167
9J1M|1|A|U|168
9J1M|1|A|A|169
9J1M|1|A|G|170

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

Large ribosomal subunit protein bL28