HL_9J1M_006

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9J1M|1|A|A|198, 9J1M|1|A|A|201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_006 not in the Motif Atlas

Geometric match to HL_9DFE_005

Geometric discrepancy: 0.0721

The information below is about HL_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9J1M|1|A|G|196
9J1M|1|A|A|197
9J1M|1|A|A|198
9J1M|1|A|A|199
9J1M|1|A|C|200
9J1M|1|A|A|201
9J1M|1|A|U|202
9J1M|1|A|C|203

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15

Chain X

Large ribosomal subunit protein bL28