HL_9J1M_014

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GCCCGUGGAAU

Length

11 nucleotides

Bulged bases

9J1M|1|A|G|475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_014 not in the Motif Atlas

Geometric match to HL_5J7L_145

Geometric discrepancy: 0.2585

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9J1M|1|A|G|471
9J1M|1|A|C|472
9J1M|1|A|C|473
9J1M|1|A|C|474
9J1M|1|A|G|475
9J1M|1|A|U|476
9J1M|1|A|G|477
9J1M|1|A|G|478
9J1M|1|A|A|479
9J1M|1|A|A|480
9J1M|1|A|U|481

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15

Chain X

Large ribosomal subunit protein bL28