HL_9J1M_042

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

AGAGCAU

Length

7 nucleotides

Bulged bases

9J1M|1|A|C|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J1M_042 not in the Motif Atlas

Geometric match to HL_5J7L_174

Geometric discrepancy: 0.0588

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9J1M|1|A|A|1865
9J1M|1|A|G|1866
9J1M|1|A|A|1867
9J1M|1|A|G|1868
9J1M|1|A|C|1869
9J1M|1|A|A|1870
9J1M|1|A|U|1871

Current chains

Chain A

23S rRNA

Nearby chains