HL_9J1M_072
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CCUCCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9J1M_072 not in the Motif Atlas
- Geometric match to HL_5J7L_167
- Geometric discrepancy: 0.2705
- The information below is about HL_5J7L_167
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.8
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 352
Unit IDs
9J1M|1|B|C|83
9J1M|1|B|C|84
9J1M|1|B|U|85
9J1M|1|B|C|86
9J1M|1|B|C|87
9J1M|1|B|G|88
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain 7
- 30S ribosomal protein THX
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- Large ribosomal subunit protein uL16
- Chain V
- Large ribosomal subunit protein bL25
- Chain Z
- Large ribosomal subunit protein uL30
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