HL_9J3R_001

3D structure

PDB id

9J3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enterococcus faecalis ROOL RNA tetramer

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

UUUGAACAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9J3R_001 not in the Motif Atlas

Geometric match to HL_6NTA_138

Geometric discrepancy: 0.3094

The information below is about HL_6NTA_138

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

46

Unit IDs

9J3R|1|A|U|39
9J3R|1|A|U|40
9J3R|1|A|U|41
9J3R|1|A|G|42
9J3R|1|A|A|43
9J3R|1|A|A|44
9J3R|1|A|C|45
9J3R|1|A|A|46
9J3R|1|A|A|47

Current chains

Chain A

RNA (580-MER)

Nearby chains

Chain B

ROOL RNA