HL_9JMK_009

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9JMK|1|A|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JMK_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1919

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

9JMK|1|A|C|305
9JMK|1|A|U|306
9JMK|1|A|G|307
9JMK|1|A|G|308
9JMK|1|A|A|309
9JMK|1|A|A|310
9JMK|1|A|A|311
9JMK|1|A|G|312

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L24