HL_9JMK_011

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9JMK|1|A|G|329, 9JMK|1|A|A|330, 9JMK|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JMK_011 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.2702

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

9JMK|1|A|G|327
9JMK|1|A|U|328
9JMK|1|A|G|329
9JMK|1|A|A|330
9JMK|1|A|C|331
9JMK|1|A|A|332
9JMK|1|A|G|333
9JMK|1|A|C|334
9JMK|1|A|C|335

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24