HL_9JMK_053

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9JMK|1|A|G|2751, 9JMK|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JMK_053 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.2391

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

9JMK|1|A|C|2745
9JMK|1|A|U|2746
9JMK|1|A|G|2747
9JMK|1|A|A|2748
9JMK|1|A|A|2749
9JMK|1|A|A|2750
9JMK|1|A|G|2751
9JMK|1|A|C|2752
9JMK|1|A|A|2753
9JMK|1|A|U|2754
9JMK|1|A|C|2755
9JMK|1|A|U|2756
9JMK|1|A|A|2757
9JMK|1|A|A|2758
9JMK|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13