HL_9K0Z_042

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGAAUAUAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_042 not in the Motif Atlas

Geometric match to HL_5J7L_138

Geometric discrepancy: 0.2908

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9K0Z|1|h|U|157
9K0Z|1|h|G|158
9K0Z|1|h|A|159
9K0Z|1|h|A|160
9K0Z|1|h|U|161
9K0Z|1|h|A|162
9K0Z|1|h|U|163
9K0Z|1|h|A|164
9K0Z|1|h|U|165
9K0Z|1|h|A|166
9K0Z|1|h|G|167

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain Y

Large ribosomal subunit protein bL28

Chain n

50S ribosomal protein L9