HL_9K0Z_051

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCCCGUGGAAU

Length

11 nucleotides

Bulged bases

9K0Z|1|h|G|474, 9K0Z|1|h|G|477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_051 not in the Motif Atlas

Geometric match to HL_5J7L_145

Geometric discrepancy: 0.2501

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9K0Z|1|h|G|470
9K0Z|1|h|C|471
9K0Z|1|h|C|472
9K0Z|1|h|C|473
9K0Z|1|h|G|474
9K0Z|1|h|U|475
9K0Z|1|h|G|476
9K0Z|1|h|G|477
9K0Z|1|h|A|478
9K0Z|1|h|A|479
9K0Z|1|h|U|480

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain Y

Large ribosomal subunit protein bL28

Chain s

Large ribosomal subunit protein uL15