HL_9K32_001
3D structure
- PDB id
- 9K32 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the NbaCas9-guide RNA-target DNA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.85 Å
Loop
- Sequence
- UUUGUCCAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9K32_001 not in the Motif Atlas
- Geometric match to HL_4P5J_002
- Geometric discrepancy: 0.3343
- The information below is about HL_4P5J_002
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- TLS RNA anticodon loop
- Motif group
- HL_32152.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9K32|1|B|U|93
9K32|1|B|U|94
9K32|1|B|U|95
9K32|1|B|G|96
9K32|1|B|U|97
9K32|1|B|C|98
9K32|1|B|C|99
9K32|1|B|A|100
9K32|1|B|G|101
Current chains
- Chain B
- Guide RNA
Nearby chains
- Chain A
- HNH nuclease domain-containing protein
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