HL_9KDT_063
3D structure
- PDB id
- 9KDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9KDT_063 not in the Motif Atlas
- Geometric match to HL_8QYX_071
- Geometric discrepancy: 0.0779
- The information below is about HL_8QYX_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01182.2
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
9KDT|1|L7|A|32
9KDT|1|L7|U|33
9KDT|1|L7|C|34
9KDT|1|L7|U|35
9KDT|1|L7|C|36
9KDT|1|L7|G|37
9KDT|1|L7|U|38
9KDT|1|L7|C|39
9KDT|1|L7|U|40
9KDT|1|L7|G|41
9KDT|1|L7|A|42
9KDT|1|L7|U|43
9KDT|1|L7|C|44
9KDT|1|L7|U|45
Current chains
- Chain L7
- Mus musculus 5S ribosomal RNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- Large ribosomal subunit protein uL18
- Chain LJ
- Large ribosomal subunit protein uL5
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