Motif HL_01182.2 Version HL_01182.2 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-3 | 1-14 | 4-14 | 5-10 | 6-12 | 7-11 | 10-13 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8QYX_071 | 8QYX | 0.0723 | 0 | B2 | 5S rRNA | A | 32 | U | 33 | C | 34 | U | 35 | C | 36 | G | 37 | U | 38 | C | 39 | U | 40 | G | 41 | A | 42 | U | 43 | C | 44 | U | 45 | ncSH | cWW | cWS | cWW | tSH | tSH | tSW |
| 2 | HL_9AXU_068 | 9AXU | 0.0000 | 0 | 3 | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | G | 37 | U | 38 | C | 39 | C | 40 | G | 41 | A | 42 | U | 43 | C | 44 | A | 45 | ncSH | cWW | cWS | cWW | tSH | tSH | tSW |
| 3 | HL_8OI5_068 | 8OI5 | 0.1145 | 0 | 3 | 5S rRNA | U | 32 | C | 33 | C | 34 | C | 35 | C | 36 | G | 37 | U | 38 | U | 39 | C | 40 | G | 41 | A | 42 | U | 43 | C | 44 | A | 45 | ncSH | cWW | cWS | cWW | ntSH | tSH | ntSW |
| 4 | HL_9PN5_070 | 9PN5 | 0.1247 | 0 | A3 | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | G | 37 | U | 38 | C | 39 | C | 40 | G | 41 | A | 42 | U | 43 | C | 44 | A | 45 | ncSH | cWW | cWS | cWW | tSH | tSH | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCCCGUCCGAUCA | 2 |
| AUCUCGUCUGAUCU | 1 |
| UCCCCGUUCGAUCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCCCGUCCGAUC | 2 |
| UCUCGUCUGAUC | 1 |
| CCCCGUUCGAUC | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Heat map statistics
- Min 0.07 | Avg 0.08 | Max 0.14
Coloring options: