HL_9KDV_100
3D structure
- PDB id
- 9KDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9KDV_100 not in the Motif Atlas
- Homologous match to HL_6UFG_007
- Geometric discrepancy: 0.1266
- The information below is about HL_6UFG_007
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 44
Unit IDs
9KDV|1|S6|G|31
9KDV|1|S6|C|32
9KDV|1|S6|C|33
9KDV|1|S6|C|34
9KDV|1|S6|A|35
9KDV|1|S6|U|36
9KDV|1|S6|A|37
9KDV|1|S6|A|38
9KDV|1|S6|C|39
Current chains
- Chain S6
- A*, P/E tRNA
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SQ
- Small ribosomal subunit protein uS9
- Chain Sx
- RNA (5'-R(P*AP*UP*CP*AP*UP*GP*AP*AP*GP*U)-3')
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