HL_9KDV_103
3D structure
- PDB id
- 9KDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GGCCCAUAACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9KDV_103 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.4991
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9KDV|1|S7|G|30
9KDV|1|S7|G|31
9KDV|1|S7|C|32
9KDV|1|S7|C|33
9KDV|1|S7|C|34
9KDV|1|S7|A|35
9KDV|1|S7|U|36
9KDV|1|S7|A|37
9KDV|1|S7|A|38
9KDV|1|S7|C|39
9KDV|1|S7|C|40
Current chains
- Chain S7
- A*, P/E tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Sx
- RNA (5'-R(P*AP*UP*CP*AP*UP*GP*AP*AP*GP*U)-3')
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