HL_9KKF_020

3D structure

PDB id

9KKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

9KKF|1|S2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KKF|1|S2|G|1054
9KKF|1|S2|A|1055
9KKF|1|S2|U|1056
9KKF|1|S2|C|1057
9KKF|1|S2|A|1058
9KKF|1|S2|G|1059
9KKF|1|S2|A|1060
9KKF|1|S2|U|1061
9KKF|1|S2|A|1062
9KKF|1|S2|C|1063
9KKF|1|S2|C|1064

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SO

40S ribosomal protein S14

Chain zz

Internal ribosome entry site; IRES