HL_9KMV_022

3D structure

PDB id

9KMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

9KMV|1|2|C|1247, 9KMV|1|2|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMV|1|2|G|1245
9KMV|1|2|A|1246
9KMV|1|2|C|1247
9KMV|1|2|U|1248
9KMV|1|2|C|1249
9KMV|1|2|A|1250
9KMV|1|2|A|1251
9KMV|1|2|C|1252
9KMV|1|2|A|1253
9KMV|1|2|C|1254

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS9

Chain U

Small ribosomal subunit protein uS10

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31