HL_9KMW_016

3D structure

PDB id

9KMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

9KMW|1|2|G|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KMW_016 not in the Motif Atlas

Homologous match to HL_9PN5_095

Geometric discrepancy: 0.3408

The information below is about HL_9PN5_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9KMW|1|2|A|957
9KMW|1|2|G|958
9KMW|1|2|G|959
9KMW|1|2|U|960
9KMW|1|2|G|961
9KMW|1|2|A|962
9KMW|1|2|A|963
9KMW|1|2|A|964
9KMW|1|2|U|965
9KMW|1|2|U|966

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain O

Small ribosomal subunit protein uS11