HL_9KMW_022

3D structure

PDB id

9KMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

9KMW|1|2|U|1248, 9KMW|1|2|C|1252, 9KMW|1|2|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KMW_022 not in the Motif Atlas

Homologous match to HL_9H3G_099

Geometric discrepancy: 0.463

The information below is about HL_9H3G_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9KMW|1|2|G|1245
9KMW|1|2|A|1246
9KMW|1|2|C|1247
9KMW|1|2|U|1248
9KMW|1|2|C|1249
9KMW|1|2|A|1250
9KMW|1|2|A|1251
9KMW|1|2|C|1252
9KMW|1|2|A|1253
9KMW|1|2|C|1254

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein uS19

Chain Q

Small ribosomal subunit protein uS9

Chain U

Small ribosomal subunit protein uS10