HL_9KMX_022

3D structure

PDB id

9KMX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

9KMX|1|2|C|1247, 9KMX|1|2|U|1248, 9KMX|1|2|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KMX_022 not in the Motif Atlas

Homologous match to HL_9PN5_101

Geometric discrepancy: 0.5599

The information below is about HL_9PN5_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9KMX|1|2|G|1245
9KMX|1|2|A|1246
9KMX|1|2|C|1247
9KMX|1|2|U|1248
9KMX|1|2|C|1249
9KMX|1|2|A|1250
9KMX|1|2|A|1251
9KMX|1|2|C|1252
9KMX|1|2|A|1253
9KMX|1|2|C|1254

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS9

Chain U

Small ribosomal subunit protein uS10

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31