HL_9KMZ_018

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

9KMZ|1|2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KMZ_018 not in the Motif Atlas

Homologous match to HL_9H3G_095

Geometric discrepancy: 0.2181

The information below is about HL_9H3G_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9KMZ|1|2|G|1054
9KMZ|1|2|A|1055
9KMZ|1|2|U|1056
9KMZ|1|2|C|1057
9KMZ|1|2|A|1058
9KMZ|1|2|G|1059
9KMZ|1|2|A|1060
9KMZ|1|2|U|1061
9KMZ|1|2|A|1062
9KMZ|1|2|C|1063
9KMZ|1|2|C|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain O

Small ribosomal subunit protein uS11

Chain a

Small ribosomal subunit protein eS26