HL_9KN0_018

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

9KN0|1|2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KN0_018 not in the Motif Atlas

Homologous match to HL_9H3G_095

Geometric discrepancy: 0.1616

The information below is about HL_9H3G_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9KN0|1|2|G|1054
9KN0|1|2|A|1055
9KN0|1|2|U|1056
9KN0|1|2|C|1057
9KN0|1|2|A|1058
9KN0|1|2|G|1059
9KN0|1|2|A|1060
9KN0|1|2|U|1061
9KN0|1|2|A|1062
9KN0|1|2|C|1063
9KN0|1|2|C|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain O

Small ribosomal subunit protein uS11

Chain a

Small ribosomal subunit protein eS26