HL_9KN0_028

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

9KN0|1|2|C|1660, 9KN0|1|2|A|1661, 9KN0|1|2|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KN0_028 not in the Motif Atlas

Homologous match to HL_9PN5_109

Geometric discrepancy: 0.3628

The information below is about HL_9PN5_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25307.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

9KN0|1|2|G|1658
9KN0|1|2|U|1659
9KN0|1|2|C|1660
9KN0|1|2|A|1661
9KN0|1|2|U|1662
9KN0|1|2|A|1663
9KN0|1|2|A|1664
9KN0|1|2|G|1665
9KN0|1|2|C|1666

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS9

Chain T

Small ribosomal subunit protein eS19

Chain U

Small ribosomal subunit protein uS10

Chain d

Small ribosomal subunit protein uS14