HL_9KN6_031
3D structure
- PDB id
- 9KN6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 9KN6|1|S2|U|1621, 9KN6|1|S2|U|1622, 9KN6|1|S2|A|1623||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9KN6_031 not in the Motif Atlas
- Homologous match to HL_9H3G_106
- Geometric discrepancy: 0.2538
- The information below is about HL_9H3G_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.4
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9KN6|1|S2|A|1614
9KN6|1|S2|U|1615
9KN6|1|S2|U|1616
9KN6|1|S2|G|1617
9KN6|1|S2|C|1618
9KN6|1|S2|A|1619
9KN6|1|S2|A|1620
9KN6|1|S2|U|1621
9KN6|1|S2|U|1622
9KN6|1|S2|A|1623||A
9KN6|1|S2|U|1624
9KN6|1|S2|U|1625
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SP
- 40S ribosomal protein S15
- Chain SS
- 40S ribosomal protein S18
- Chain ST
- 40S ribosomal protein S19
- Chain Sd
- 40S ribosomal protein S29
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