HL_9KZU_043

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

9KZU|1|L5|C|2794, 9KZU|1|L5|G|2796, 9KZU|1|L5|A|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KZU_043 not in the Motif Atlas

Homologous match to HL_8GLP_045

Geometric discrepancy: 0.1003

The information below is about HL_8GLP_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.5

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9KZU|1|L5|C|2792
9KZU|1|L5|G|2793
9KZU|1|L5|C|2794
9KZU|1|L5|A|2795
9KZU|1|L5|G|2796
9KZU|1|L5|C|2797
9KZU|1|L5|A|2798
9KZU|1|L5|G|2799

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39

Chain zx

nascent peptide