HL_9KZU_087

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9KZU|1|S2|A|448, 9KZU|1|S2|C|450, 9KZU|1|S2|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|S2|C|441
9KZU|1|S2|C|442
9KZU|1|S2|U|443
9KZU|1|S2|G|444
9KZU|1|S2|A|445
9KZU|1|S2|G|446
9KZU|1|S2|A|447
9KZU|1|S2|A|448
9KZU|1|S2|A|449
9KZU|1|S2|C|450
9KZU|1|S2|G|451
9KZU|1|S2|G|452

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8

Chain SY

40S ribosomal protein S24