HL_9KZU_109

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

9KZU|1|S2|U|1621, 9KZU|1|S2|U|1622, 9KZU|1|S2|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|S2|A|1614
9KZU|1|S2|U|1615
9KZU|1|S2|U|1616
9KZU|1|S2|G|1617
9KZU|1|S2|C|1618
9KZU|1|S2|A|1619
9KZU|1|S2|A|1620
9KZU|1|S2|U|1621
9KZU|1|S2|U|1622
9KZU|1|S2|A|1623
9KZU|1|S2|U|1624
9KZU|1|S2|U|1625

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18

Chain Sd

40S ribosomal protein S29