HL_9KZX_090

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

9KZX|1|S2|U|1061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|S2|G|1054
9KZX|1|S2|A|1055
9KZX|1|S2|U|1056
9KZX|1|S2|C|1057
9KZX|1|S2|A|1058
9KZX|1|S2|G|1059
9KZX|1|S2|A|1060
9KZX|1|S2|U|1061
9KZX|1|S2|A|1062
9KZX|1|S2|C|1063
9KZX|1|S2|C|1064

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26

Chain zu

Transfer RNA; tRNA

Chain zv

mRNA