HL_9MDS_020

3D structure

PDB id

9MDS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ROOL RNA nanocage (env-120)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGAAAG

Length

7 nucleotides

Bulged bases

9MDS|1|B|G|272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MDS_020 not in the Motif Atlas

Geometric match to HL_5J7L_167

Geometric discrepancy: 0.328

The information below is about HL_5J7L_167

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9MDS|1|B|U|270
9MDS|1|B|C|271
9MDS|1|B|G|272
9MDS|1|B|A|273
9MDS|1|B|A|274
9MDS|1|B|A|275
9MDS|1|B|G|276

Current chains

Chain B

RNA (598-MER)

Nearby chains

Chain A

RNA (598-MER)