HL_9MKK_007

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MKK_007 not in the Motif Atlas

Geometric match to HL_5J7L_008

Geometric discrepancy: 0.1321

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9MKK|1|A|A|320
9MKK|1|A|A|321
9MKK|1|A|C|322
9MKK|1|A|U|323
9MKK|1|A|G|324
9MKK|1|A|A|325
9MKK|1|A|G|326
9MKK|1|A|A|327
9MKK|1|A|C|328
9MKK|1|A|A|329
9MKK|1|A|C|330
9MKK|1|A|G|331
9MKK|1|A|G|332
9MKK|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20