HL_9MKK_041

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9MKK|1|a|G|329, 9MKK|1|a|A|330, 9MKK|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MKK_041 not in the Motif Atlas

Geometric match to HL_5J7L_144

Geometric discrepancy: 0.1675

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9MKK|1|a|G|327
9MKK|1|a|U|328
9MKK|1|a|G|329
9MKK|1|a|A|330
9MKK|1|a|C|331
9MKK|1|a|A|332
9MKK|1|a|G|333
9MKK|1|a|C|334
9MKK|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

50S ribosomal protein L24