HL_9MKK_043

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9MKK|1|a|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MKK_043 not in the Motif Atlas

Geometric match to HL_7A0S_014

Geometric discrepancy: 0.1515

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9MKK|1|a|G|410
9MKK|1|a|G|411
9MKK|1|a|A|412
9MKK|1|a|C|413
9MKK|1|a|C|414
9MKK|1|a|A|415
9MKK|1|a|U|416
9MKK|1|a|C|417

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15