HL_9MKK_068

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MKK_068 not in the Motif Atlas

Geometric match to HL_4V9F_046

Geometric discrepancy: 0.0925

The information below is about HL_4V9F_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80709.5

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9MKK|1|a|C|1752
9MKK|1|a|G|1753
9MKK|1|a|A|1754
9MKK|1|a|A|1755
9MKK|1|a|G|1756

Current chains

Chain a

23S rRNA

Nearby chains

Chain o

Large ribosomal subunit protein bL19