HL_9MKK_073

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9MKK|1|a|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MKK_073 not in the Motif Atlas

Geometric match to HL_5J7L_182

Geometric discrepancy: 0.1574

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9MKK|1|a|G|1949
9MKK|1|a|G|1950
9MKK|1|a|U|1951
9MKK|1|a|A|1952
9MKK|1|a|A|1953
9MKK|1|a|G|1954
9MKK|1|a|U|1955
9MKK|1|a|U|1956
9MKK|1|a|C|1957

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain j

Large ribosomal subunit protein uL14